Senior Scientist, Full Stack Developer/Software Engineer – Protein Design

DescriptionJanssen Research & Development, L.L.C., (JRD) a division of Johnson & Johnson's Family of Companies, is recruiting for a Senior Scientist, Full Stack Developer/Software Engineer – Protein Design, with a preference for this individual to be located at our JRD site in either Spring House, PA or Cambridge, MA.  Remote work options may be considered on a case-by-case basis and if approved by the Company.At the Janssen Pharmaceutical Companies of Johnson & Johnson, we work to create a world without disease. Transforming lives by finding new and better ways to prevent, intercept, treat and cure disease inspires us. We bring together the best minds and pursue the most promising science. We collaborate with the world for the health of everyone in it. Learn more at www.janssen.com and follow us @JanssenGlobal. Janssen Research & Development is part of the Janssen Pharmaceutical Companies.At the Janssen Pharmaceutical Companies of Johnson & Johnson, we are working to create a world without disease! Transforming lives by finding new and better ways to prevent, intercept, treat and cure disease is what inspires us. We bring together the best minds to pursue the most promising science. We are Janssen. We collaborate with the world for the health of everyone in it. Learn more at www.janssen.com and follow us @JanssenGlobal. Janssen Research & Development, LLC is part of the Janssen Pharmaceutical Companies.At Johnson & Johnson, we believe health is everything. Our strength in healthcare innovation empowers us to build a world where complex diseases are prevented, treated, and cured, where treatments are smarter and less invasive, and solutions are personal. Through our expertise in Innovative Medicine and MedTech, we are uniquely positioned to innovate across the full spectrum of healthcare solutions today to deliver the breakthroughs of tomorrow, and profoundly impact health for humanity. Learn more at  This role presents a great opportunity within the Therapeutics Discovery organization to spearhead our in silico molecular design and simulation initiatives, supporting and accelerating our drug discovery and development pipeline of protein-based therapeutics. As part of the In Silico Discovery division within Therapeutics Discovery, you will collaborate closely with a passionate team of scientists and engineers. Your work will be pivotal in building, evaluating, and refining sophisticated computational approaches and infrastructures. By developing and maintaining highly scalable protein design and modeling infrastructures, web-based applications for dry and wet-lab scientists, and the development of innovative ML models, you will play a critical role in the molecular design and optimization process. Your efforts will contribute to delivering unique molecules and expediting the discovery of protein therapeutics across various modalities and indications including protein, gene, and cell therapy. Your role will bridge the gap between computational biology and software engineering, using your extensive coding expertise, cloud computing knowledge, and familiarity with machine learning architectures to enable groundbreaking discoveries in protein therapeutics.Key Responsibilities:Apply infrastructure as code (IaC) tools, such as Terraform, to automate and run cloud resources efficiently and effectively.Employ extensive coding skills in Python to develop software tools and pipelines critical to therapeutic discovery.Develop and maintain web applications that enable intuitive access to our protein design platforms and software tools for multi-functional teams across J&J.Develop and fine-tune ML models to support innovative research and development in protein design, structural modeling, and attribute predictions to enable multi-property optimization and de-novo design. Integrate and lead deployment of workflow systems like Flyte, Nextflow, or Airflow to streamline the execution of sophisticated design, modeling, and ML tasks as well as automated data processing DevOps pipelines.Contribute to general DevOps practices, including continuous integration/continuous deployment (CI/CD) pipelines, monitoring, logging, and incident response, to ensure high availability and performance of our platforms.QualificationsPhD in Biomedical Engineering, Biochemistry, Computational Biology, Computer Science, Structural Biology, Biophysics, Material Science, or other related quantitative field with at least 3 years of experience is required.OrMSc in Biomedical Engineering, Biochemistry, Computational Biology, Computer Science, Structural Biology, Biophysics, Material Science, or other related quantitative field with at least 5 years of experience is required.Extensive knowledge of cloud compute infrastructure is required.  Demonstrated AWS experience is strongly preferred. Experience with infrastructure as code (IaC) tools, such as Terraform, is preferred.Demonstrable experience in high-performance computing (HPC) environments, with the ability to optimize and manage computational workflows for bioinformatics and machine learning tasks is preferred.Broad experience in DevOps practices is required.  Examples may include but are not limited to automation, CI/CD, containerization (e.g., Docker, Kubernetes), monitoring, and incident management.Extensive expertise in Python is required.  A track record of developing sophisticated software solutions in a scientific or research context is preferred.Strong front-end development skills and a solid understanding of user experience (UX) principles and web development frameworks, particularly in creating complex web apps is required. Familiarity with workflow management systems such as Nextflow, Airflow, or Snakemake (or similar) frameworks to support scalable and reproducible research pipelines preferred.Solid understanding of machine learning infrastructures, including experience with large language models, convolutional neural networks, and classic ML algorithms such as Catboost or XGBoost are preferred. Direct experience in training ML models for scientific research is a plus.The preferred location for this position is either Spring House, PA or Cambridge, MA.  Remote work options within the US will be considered on a case-by-case basis. Johnson & Johnson is an Affirmative Action and Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, age, national origin, or protected veteran status and will not be discriminated against on the basis of disability.  The anticipated base pay range for this position is $113,000 to $195,500. The compensation and benefits information set forth in this posting applies to candidates hired in the United States. The Company maintains highly competitive, performance-based compensation programs. Under current guidelines, this position is eligible for an annual performance bonus in accordance with the terms of the applicable plan. The annual performance bonus is a cash bonus intended to provide an incentive to achieve annual targeted results by rewarding for individual and the corporation’s performance over a calendar/performance year. Bonuses are awarded at the Company’s discretion on an individual basis. Employees and/or eligible dependents may be eligible to participate in the following Company sponsored employee benefit programs: medical, dental, vision, life insurance, short- and long-term disability, business accident insurance, and group legal insurance. Employees may be eligible to participate in the Company’s consolidated retirement plan (pension) and savings plan (401(k)). Employees are eligible for the following time off benefits: •       Vacation – up to 120 hours per calendar year  •       Sick time - up to 40 hours per calendar year; for employees who reside in the State of Washington – up to 56 hours per calendar year  •       Holiday pay, including Floating Holidays – up to 13 days per calendar year •       Work, Personal and Family Time - up to 40 hours per calendar year For additional general information on Company benefits, please go to: - . For more information on how we support the whole health of our employees throughout their wellness, career and life journey, please visit .This job posting is anticipated to close on 03/15/2024.  The Company may however extend this time-period, in which case the posting will remain available on https://www.careers.jnj.com to accept additional applications. #JNJDataScienceIND7Job Field: Biotherapeutics R&DOrganization: Janssen Research & Development, LLC (6084)